UGENE - an integrated bioinformatics suite with handy visual interface. Tree-puzzle - TREE-PUZZLE is a computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood.ĭIALIGN2 - a command line tool to perform multiple alignment of protein or DNA sequences. It can read and display NEXUS and Newick format tree files (such as those output by PAUP*, ClustalX, TREE-PUZZLE, and other programs). Tree View X - Tree View X is an open source program to display phylogenetic trees on Linux, Unix, Mac OS X, and Windows platforms. Phylip - A Package of programs for inferring phylogenies. Seaview - A sequence editor with multiple alignment (via ClustalW) and other capabilities In the authors tests, MUSCLE achieved the highest scores of all tested programs on several alignment accuracy benchmarks, and is also one of the fastest programs out there MUSCLE stands for multiple sequence comparison by log-expectation. Muscle - A program for multiple alignment of protein sequences. ClustalX is a GUI front end for ClustalW.Įmboss - a suite of bioinformatics tools. Ubuntu Linux includes many packages useful for biologists.īioPerl - a collection of Perl modules that are useful for programmers in bioinformatics/biologyĬlustalw - This program performs an alignment of multiple nucleotide or amino acid sequences. The aim of this page is to become a useful resource for biologists and students using Ubuntu (or any other) Linux.
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